Published#

This page lists some major publications I have been involved with. It is generated automatically via the ORCID API. Here’s a blog post describing the approach I use for this.

2022#

DuPre, E., Holdgraf, C., Karakuzu, A., Tetrel, L., Bellec, P., Stikov, N., Poline, J. (2022). Beyond advertising: New infrastructures for publishing integrated research objects. Public Library of Science (PLoS). dx.doi.org/10.1371/journal.pcbi.1009651

2021#

Rokem, A., Dichter, B., Holdgraf, C., Ghosh, S. (2021). Pan-neuro: interactive computing at scale with BRAIN datasets. Center for Open Science. dx.doi.org/10.31219/osf.io/mwh2b

Gentemann, C., Holdgraf, C., Abernathey, R., Crichton, D., Colliander, J., Kearns, E., Panda, Y., Signell, R. (2021). Science Storms the Cloud. American Geophysical Union (AGU). dx.doi.org/10.1029/2020av000354

2019#

Appelhoff, S., Sanderson, M., Brooks, T., van Vliet, M., Quentin, R., Holdgraf, C., Chaumon, M., Mikulan, E., Tavabi, K., Höchenberger, R., Welke, D., Brunner, C., Rockhill, A., Larson, E., Gramfort, A., Jas, M. (2019). MNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysis. The Open Journal. dx.doi.org/10.21105/joss.01896

Wasser, L., Joseph, M., McGlinchy, J., Palomino, J., Korinek, N., Holdgraf, C., Head, T. (2019). EarthPy: A Python package that makes it easier to explore and plot raster and vector data using open source Python tools.. The Open Journal. dx.doi.org/10.21105/joss.01886

Yarkoni, T., Markiewicz, C., de la Vega, A., Gorgolewski, K., Salo, T., Halchenko, Y., McNamara, Q., DeStasio, K., Poline, J., Petrov, D., Hayot-Sasson, V., Nielson, D., Carlin, J., Kiar, G., Whitaker, K., DuPre, E., Wagner, A., Tirrell, L., Jas, M., Hanke, M., Poldrack, R., Esteban, O., Appelhoff, S., Holdgraf, C., Staden, I., Thirion, B., Kleinschmidt, D., Lee, J., di Castello, M., Notter, M., Blair, R. (2019). PyBIDS: Python tools for BIDS datasets. The Open Journal. dx.doi.org/10.21105/joss.01294

2018#

Holdgraf, C., Appelhoff, S., Bickel, S., Bouchard, K., D’Ambrosio, S., David, O., Devinsky, O., Dichter, B., flinker, a., Foster, B., Gorgolewski, K., Groen, I., Groppe, D., Gunduz, A., Hamilton, L., Honey, C., Jas, M., Knight, R., Lachaux, J., Lau, J., Lundstrom, B., Lee-Messer, C., Miller, K., Ojemann, J., Oostenveld, R., Piantoni, G., Petridou, N., Pigorini, A., Pouratian, N., ramsey, N., Stolk, A., Swann, N., Tadel, F., Voytek, B., Wandell, B., Winawer, J., Zehl, L., Hermes, D. (2018). BIDS-iEEG: an extension to the brain imaging data structure (BIDS) specification for human intracranial electrophysiology. Center for Open Science. dx.doi.org/10.31234/osf.io/r7vc2

Geiger, R., Varoquaux, N., Mazel-Cabasse, C., Holdgraf, C. (2018). The Types, Roles, and Practices of Documentation in Data Analytics Open Source Software Libraries. Springer Science and Business Media LLC. dx.doi.org/10.1007/s10606-018-9333-1

Geiger, R., Varoquaux, N., Cabasse, C., Holdgraf, C. (2018). The Types, Roles, and Practices of Documentation in Data Analytics Open Source Software Libraries: A Collaborative Ethnography of Documentation Work. Center for Open Science. dx.doi.org/10.31235/osf.io/2fdhr

Jupyter, P., Bussonnier, M., Forde, J., Freeman, J., Granger, B., Head, T., Holdgraf, C., Kelley, K., Nalvarte, G., Osheroff, A., Pacer, M., Panda, Y., Perez, F., Ragan-Kelley, B., Willing, C. (2018). Binder 2.0 - Reproducible, interactive, sharable environments for science at scale. SciPy. dx.doi.org/10.25080/majora-4af1f417-011

2017#

Holdgraf, C., Rieger, J., Micheli, C., Martin, S., Knight, R., Theunissen, F. (2017). Encoding and Decoding Models in Cognitive Electrophysiology. Frontiers Media SA. dx.doi.org/10.3389/fnsys.2017.00061

Holdgraf, C., Culich, A., Rokem, A., Deniz, F., Alegro, M., Ushizima, D. (2017). Portable Learning Environments for Hands-On Computational Instruction. ACM. dx.doi.org/10.1145/3093338.3093370

2016#

Holdgraf, C., de Heer, W., Pasley, B., Rieger, J., Crone, N., Lin, J., Knight, R., Theunissen, F. (2016). Rapid tuning shifts in human auditory cortex enhance speech intelligibility. Springer Science and Business Media LLC. dx.doi.org/10.1038/ncomms13654

2014#

Martin, S., Brunner, P., Holdgraf, C., Heinze, H., Crone, N., Rieger, J., Schalk, G., Knight, R., Pasley, B. (2014). Decoding spectrotemporal features of overt and covert speech from the human cortex. Frontiers Media SA. dx.doi.org/10.3389/fneng.2014.00014

2012#

Sfondouris, J., Quebedeaux, T., Holdgraf, C., Musto, A. (2012). Combined process automation for large-scale EEG analysis. Elsevier BV. dx.doi.org/10.1016/j.compbiomed.2011.10.017