This page lists some major publications I have been involved with. It is generated automatically via the ORCID API. Here’s a blog post describing the approach I use for this.


DuPre, E., Holdgraf, C., Karakuzu, A., Tetrel, L., Bellec, P., Stikov, N., Poline, J. (2022). Beyond advertising: New infrastructures for publishing integrated research objects. Public Library of Science (PLoS).


Rokem, A., Dichter, B., Holdgraf, C., Ghosh, S. (2021). Pan-neuro: interactive computing at scale with BRAIN datasets. Center for Open Science.

Gentemann, C., Holdgraf, C., Abernathey, R., Crichton, D., Colliander, J., Kearns, E., Panda, Y., Signell, R. (2021). Science Storms the Cloud. American Geophysical Union (AGU).


Appelhoff, S., Sanderson, M., Brooks, T., van Vliet, M., Quentin, R., Holdgraf, C., Chaumon, M., Mikulan, E., Tavabi, K., Höchenberger, R., Welke, D., Brunner, C., Rockhill, A., Larson, E., Gramfort, A., Jas, M. (2019). MNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysis. The Open Journal.

Wasser, L., Joseph, M., McGlinchy, J., Palomino, J., Korinek, N., Holdgraf, C., Head, T. (2019). EarthPy: A Python package that makes it easier to explore and plot raster and vector data using open source Python tools.. The Open Journal.

Yarkoni, T., Markiewicz, C., de la Vega, A., Gorgolewski, K., Salo, T., Halchenko, Y., McNamara, Q., DeStasio, K., Poline, J., Petrov, D., Hayot-Sasson, V., Nielson, D., Carlin, J., Kiar, G., Whitaker, K., DuPre, E., Wagner, A., Tirrell, L., Jas, M., Hanke, M., Poldrack, R., Esteban, O., Appelhoff, S., Holdgraf, C., Staden, I., Thirion, B., Kleinschmidt, D., Lee, J., di Castello, M., Notter, M., Blair, R. (2019). PyBIDS: Python tools for BIDS datasets. The Open Journal.


Holdgraf, C., Appelhoff, S., Bickel, S., Bouchard, K., D’Ambrosio, S., David, O., Devinsky, O., Dichter, B., flinker, a., Foster, B., Gorgolewski, K., Groen, I., Groppe, D., Gunduz, A., Hamilton, L., Honey, C., Jas, M., Knight, R., Lachaux, J., Lau, J., Lundstrom, B., Lee-Messer, C., Miller, K., Ojemann, J., Oostenveld, R., Piantoni, G., Petridou, N., Pigorini, A., Pouratian, N., ramsey, N., Stolk, A., Swann, N., Tadel, F., Voytek, B., Wandell, B., Winawer, J., Zehl, L., Hermes, D. (2018). BIDS-iEEG: an extension to the brain imaging data structure (BIDS) specification for human intracranial electrophysiology. Center for Open Science.

Geiger, R., Varoquaux, N., Mazel-Cabasse, C., Holdgraf, C. (2018). The Types, Roles, and Practices of Documentation in Data Analytics Open Source Software Libraries. Springer Science and Business Media LLC.

Geiger, R., Varoquaux, N., Cabasse, C., Holdgraf, C. (2018). The Types, Roles, and Practices of Documentation in Data Analytics Open Source Software Libraries: A Collaborative Ethnography of Documentation Work. Center for Open Science.

Jupyter, P., Bussonnier, M., Forde, J., Freeman, J., Granger, B., Head, T., Holdgraf, C., Kelley, K., Nalvarte, G., Osheroff, A., Pacer, M., Panda, Y., Perez, F., Ragan-Kelley, B., Willing, C. (2018). Binder 2.0 - Reproducible, interactive, sharable environments for science at scale. SciPy.


Holdgraf, C., Rieger, J., Micheli, C., Martin, S., Knight, R., Theunissen, F. (2017). Encoding and Decoding Models in Cognitive Electrophysiology. Frontiers Media SA.

Holdgraf, C., Culich, A., Rokem, A., Deniz, F., Alegro, M., Ushizima, D. (2017). Portable Learning Environments for Hands-On Computational Instruction. ACM.


Holdgraf, C., de Heer, W., Pasley, B., Rieger, J., Crone, N., Lin, J., Knight, R., Theunissen, F. (2016). Rapid tuning shifts in human auditory cortex enhance speech intelligibility. Springer Science and Business Media LLC.


Martin, S., Brunner, P., Holdgraf, C., Heinze, H., Crone, N., Rieger, J., Schalk, G., Knight, R., Pasley, B. (2014). Decoding spectrotemporal features of overt and covert speech from the human cortex. Frontiers Media SA.


Sfondouris, J., Quebedeaux, T., Holdgraf, C., Musto, A. (2012). Combined process automation for large-scale EEG analysis. Elsevier BV.